A Activity diagram used in UML 6/9 and SysML B Bachman diagram Booch used in software engineering Block diagram Block Definition Diagram BDD used in SysML C Carroll diagram Cartogram Catalytic cycle Chemical equation Curly arrow diagram Category theory diagrams Cause-and-effect diagram Chord diagram Circuit diagram Class diagram from UML 1/9 Collaboration diagram from UML 2.0 Communication diagram from UML 2.0 Commutative diagram Comparison diagram Component diagram from UML 3/9 Composite structure diagram from UML 2.0 Concept map Constellation diagram Context diagram Control flow diagram Contour diagram Cordier diagram Cross functional flowchart D Data model diagram Data flow diagram Data structure diagram Dendrogram Dependency diagram Deployment diagram from UML 9/9 Dot and cross diagram Double bubble map used in education Drakon-chart E Entity-Relationship diagram ERD Event-driven process chain Euler diagram Eye diagram a diagram of a received telecommunications signal Express-G Extended Functional Flow Block Diagram EFFBD F Family tree Feynman diagram Flow chart Flow process chart Flow diagram Fusion diagram Free body diagram G Gantt chart shows the timing of tasks or activities used in project management Grotrian diagram Goodman diagram shows the fatigue data example: for a wind turbine blades H Hasse diagram HIPO diagram I Internal Block Diagram IBD used in SysML IDEF0 IDEF1 entity relations Interaction overview diagram from UML Ishikawa diagram J Jackson diagram K Karnaugh map Kinematic diagram L Ladder diagram Line of balance Link grammar diagram M Martin ERD Message Sequence Chart Mind map used for learning, brainstorming, memory, visual thinking and problem solving Minkowski spacetime diagram Molecular orbital diagram N N2 Nassi Shneiderman diagram or structogram a representation for structured programming Nomogram Network diagram O Object diagram from UML 2/9 Organigram Onion diagram also known as "stacked Venn diagram" P Package diagram from UML 4/9 and SysML Parametric diagram from SysML PERT Petri net shows the structure of a distributed system as a directed bipartite graph with annotations Phylogenetic tree - represents a phylogeny evolutionary relationships among groups of organisms Piping and instrumentation diagram P&ID Phase diagram used to present solid/liquid/gas information Plant Diagram Pressure volume diagram used to analyse engines Pourbaix diagram Process flow diagram or PFD used in chemical engineering Program structure diagram R Radar chart Radial Diagram Requirement Diagram Used in SysML Rich Picture R-diagram Routing diagram S Sankey diagram represents material, energy or cost flows with quantity proportional arrows in a process network. Sentence diagram represents the grammatical structure of a natural language sentence. Sequence diagram from UML 8/9 and SysML SDL/GR diagram Specification and Description Language. SDL is a formal language used in computer science. Smith chart Spider chart Spray diagram SSADM Structured Systems Analysis and Design Methodology used in software engineering Star chart/Celestial sphere State diagram are used for state machines in software engineering from UML 7/9 Swim lane Syntax diagram used in software engineering to represent a context-free grammar Systems Biology Graphical Notation a graphical notation used in diagrams of biochemical and cellular processes studied in Systems biology System context diagram System structure Systematic layout planning T Timing Diagram: Digital Timing Diagram Timing Diagram: UML 2.0 TQM Diagram Treemap U UML diagram Unified Modeling Language used in software engineering Use case diagram from UML 5/9 and SysML V Value Stream Mapping Venn diagram Voronoi diagram W Warnier-Orr Williot diagram Y Yourdon-Coad see Edward Yourdon, used in software engineering
q2 SCNIC: munity Tutorial SCNIC (Sparse Cooccurnce Network Investigation for positional data) is a tool for building correlation networks from feature tables, finding modules in said networks and summarizing those modules. Access to all these functionalities is available to qiime2 users via the q2 SCNIC plugin. The SCNIC method serves three main purposes: Making it easy for qiime 2 users ...
I'm new to using QIIME2. I have installation problem with q2 SCNIC now. I fallowed this installation guide GitHub lozuponelab q2 SCNIC: A QIIME2 plugin for running SCNIC and it has been installed successfully.
UTSA is a public research university and a Hispanic Serving Institution located in scenic San Antonio, Texas. The main campus, where the graduate position will be housed, enrolls ~34,000 students and has a diverse set of collaborative groups spanning ecology, microbiology, geosciences, and natural resource management.
Hi everyone, I have just finished going through my qiime2 analysis following the moving pictures and fecal sample tutorial (for merging). I have created my phyloseq object using the following R code: physeq_21< qza_to…
I have a problem with the installation of package. Namely, when I try to install it using "devtools::install_github ("jbisanz qiime2R" I get the following error:
I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic plugin, taxa barplot, and picrust2) See this page for more details and an example (that covers some of the methods you mentioned):
Dear devs, dear users I am processing metagenome dataset. I currently follow the q2 moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I modified some steps. I assembled metagenomes and binned samples outside of Qiime2. So, for each sample, I have bins that are not dereplicated and not filtered. My plan is to import all the bins together into Qiime2, filter ...
Hi, I want to profile the protist community in the rhizosphere, can I use silva database as listed following?
Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem. According to PERMANOVA, there are significant differences between communities of the two sample types. However, when performing differential abundance analysis (Tried ANCOM and LEFSE so far) and performing Holm p value correction, I detect zero significantly different ...
Hi, I tried to look for an answer for this question but found nothing similar I want to filter my rep seqs.qza (after it was clustered and filtered along the table.qza) to 2 groups, based on the samples (in my example, I have 2 treatments (lettuce tomato), with 3 samples each). How can I create 2 .qza files one with the lettuce seqs and the other with the tomato seqs, that I can later ...
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